CometWiki

http://www.dayel.com/comet/supmat/movies/thumbnails/FigS2_Fig1_x_proj.mov.png http://www.dayel.com/comet/supmat/movies/thumbnails/FigS3_Fig1vtkx1.mov.png http://www.dayel.com/comet/supmat/movies/thumbnails/FigS7b_Symmetric_Capsule.mov.png

This wiki describes how to set up and use the `comet' program. You can read an introduction to the comet project here(to return here, click on 'cometwiki' rather than using the browser back button).

Essential Information How the Program Works Description of the Model Overview of Program Flow Video Tutorials How to run the comet program on OS X How to make 3D isosurfaces. Installing the Program comet runs on any unix-like operating system, including OS X, Linux or Windows (under cygwin). Instructions for downloading and installing comet Running the Program The program is called from the command line. The command line parameters tell the program what to do (calculate a new run, re-process existing data, interactive 3D view etc.). A cometparams.ini file in the working directory tells the program detailed information about the model parameters to use for calculation and display. Command line parameters for the comet program Model settings in the cometparams.ini file Display settings in the cometparams.ini file Running comet on a cluster

Simulator Output Example Results Symmetry Breaking and Motility Forces during Symmetry Breaking Circumferential and Radial measurements Ellipsoid and Capsule symmetry breaking Model Robustness The effect of changing the main parameters In Vitro 3D Reconstructions of in vitro Constrained Shells 3D Reconstructions of in vitro Unconstrained Shells In Depth Information Inner workings of the code Detailed Program Flow Implementation in C++ Making Measurments Tracking network movement and making measurements Radial Force Movies

Code Status

• Source Repository
• Source Files
• Download OS X Binaries

• Known Issues
• To Do

• Using Git