User contributions
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- 15:47, 17 April 2009 (diff | hist) . . (+80) . . m Cometparams.ini parameter file
- 15:44, 17 April 2009 (diff | hist) . . (-1) . . m Program Flow
- 15:37, 17 April 2009 (diff | hist) . . (+2) . . m Using Git (current)
- 15:34, 17 April 2009 (diff | hist) . . (+224) . . m Using Git
- 15:02, 17 April 2009 (diff | hist) . . (+169) . . m Program Flow (→Simple Overview)
- 14:59, 17 April 2009 (diff | hist) . . (+22) . . N File:Mymodel forces.png (Forces acting on nodes) (current)
- 14:59, 17 April 2009 (diff | hist) . . (+44) . . N File:Mymodel.png (Diagram of node/link arrangement around bead) (current)
- 14:42, 17 April 2009 (diff | hist) . . (+127) . . m Program Flow (→Simple Overview)
- 14:38, 17 April 2009 (diff | hist) . . (+54) . . N File:Links crosssection inset.jpg (Cross section of shell showing links colored by strain) (current)
- 18:27, 16 April 2009 (diff | hist) . . (0) . . m CometWiki (→CometWiki)
- 18:26, 16 April 2009 (diff | hist) . . (+7) . . m CometWiki (→Examples)
- 18:25, 16 April 2009 (diff | hist) . . (+1) . . m CometWiki
- 18:24, 16 April 2009 (diff | hist) . . (+127) . . m CometWiki (→Simulator Output)
- 18:24, 16 April 2009 (diff | hist) . . (-112) . . m CometWiki (→Examples)
- 18:22, 16 April 2009 (diff | hist) . . (+850) . . Nm 3D Reconstructions of in vitro Unconstrained Shells (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS9_MM2-Rx4-01.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS9_MM2-Rx4-01.mov.png] Constrained Shell #1 [http://www.d...')
- 18:21, 16 April 2009 (diff | hist) . . (+673) . . Nm 3D Reconstructions of in vitro Constrained Shells (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS8_MM2-Rx6-01.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS8_MM2-Rx6-01.mov.png] Constrained Shell #1 [http://www.d...')
- 18:21, 16 April 2009 (diff | hist) . . (+399) . . Nm Ellipsoid and Capsule symmetry breaking (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS7a_Ellipsoid_vtk_.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS7a_Ellipsoid_vtk_.mov.png] Sideways symmetry breaking...') (current)
- 18:21, 16 April 2009 (diff | hist) . . (+427) . . m Circumferential and Radial measurements (current)
- 18:20, 16 April 2009 (diff | hist) . . (-229) . . m Circumferential and Radial measurements
- 18:20, 16 April 2009 (diff | hist) . . (-219) . . m Forces during Symmetry Breaking (current)
- 18:19, 16 April 2009 (diff | hist) . . (+649) . . Nm Circumferential and Radial measurements (Created page with ' [http://www.dayel.com/comet/supmat/movies/FigS6b_vtk_radial_trimmed.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS6b_vtk_radial_trimmed.mov.png] Radial measuremen...')
- 18:19, 16 April 2009 (diff | hist) . . (+637) . . Nm Forces during Symmetry Breaking (Created page with '==Circumferential and Radial measurements== [http://www.dayel.com/comet/supmat/movies/FigS4a_circ_measure_vtk_.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS4a_cir...')
- 18:18, 16 April 2009 (diff | hist) . . (+652) . . Nm Symmetry Breaking and Motility (Created page with 'Click on the thumbnails below to play example movies. ==Symmetry Breaking and Motility== [http://www.dayel.com/comet/supmat/movies/FigS1_Data09_roi_frame_.mov http://www.dayel...') (current)
- 18:18, 16 April 2009 (diff | hist) . . (+301) . . m CometWiki
- 18:15, 16 April 2009 (diff | hist) . . (-14) . . m CometWiki
- 18:15, 16 April 2009 (diff | hist) . . (-1) . . m CometWiki
- 18:14, 16 April 2009 (diff | hist) . . (-25) . . m CometWiki
- 18:14, 16 April 2009 (diff | hist) . . (+62) . . m CometWiki
- 18:11, 16 April 2009 (diff | hist) . . (-20) . . m CometWiki (→In Depth)
- 18:07, 16 April 2009 (diff | hist) . . (+1) . . m Installing (→Installing the program)
- 18:06, 16 April 2009 (diff | hist) . . (+32) . . m Installing
- 18:06, 16 April 2009 (diff | hist) . . (+54) . . m Installing (→Installing the program)
- 18:03, 16 April 2009 (diff | hist) . . (+67) . . m Installing (→Downloading the source)
- 18:01, 16 April 2009 (diff | hist) . . (-12) . . m Installing (→Precomiled binary for OS X)
- 18:01, 16 April 2009 (diff | hist) . . (-30) . . m Installing (→Installing the program)
- 18:00, 16 April 2009 (diff | hist) . . (+70) . . m Installing (→Precomiled binary for OS X)
- 17:59, 16 April 2009 (diff | hist) . . (+15) . . m CometWiki (→Installing the program)
- 17:57, 16 April 2009 (diff | hist) . . (+68) . . m CometWiki (→Installing the program)
- 17:56, 16 April 2009 (diff | hist) . . (+343) . . m CometWiki (→Running the program)
- 17:52, 16 April 2009 (diff | hist) . . (+27) . . m CometWiki
- 17:51, 16 April 2009 (diff | hist) . . (+57) . . m CometWiki (→Running the program)
- 17:47, 16 April 2009 (diff | hist) . . (-120) . . m Cometparams.ini parameter file
- 17:43, 16 April 2009 (diff | hist) . . (+2,732) . . m Display settings (current)
- 17:18, 16 April 2009 (diff | hist) . . (+313) . . m Display settings (→Plotting forces on bead)
- 14:48, 16 April 2009 (diff | hist) . . (+530) . . Nm Using Git (Created page with '[http://zrusin.blogspot.com/2007/09/git-cheat-sheet.html This cheat sheet] is a good summary of useful git commands. To have changes you've made merged into the main repository,...')
- 14:41, 16 April 2009 (diff | hist) . . (+15) . . m CometWiki (→Code Status)
- 12:49, 15 April 2009 (diff | hist) . . (+1,145) . . m Display settings
- 12:37, 15 April 2009 (diff | hist) . . (+1,873) . . Nm Display settings (Created page with 'Many settings in the <code>cometparams.ini</code> affect the way data is displayed. ==Bitmap display settings== ===Basic settings=== X_BMP true Y_BMP ...')
- 12:21, 15 April 2009 (diff | hist) . . (+22) . . m CometWiki
- 10:21, 14 April 2009 (diff | hist) . . (+197) . . Nm CometWiki:About (Created page with 'This site describes the set up and usage of `comet', an actin-based bead motility simulator. If you would like to help edit the site, fill out [[Special:RequestAccount|an acc...') (current)
- 10:07, 14 April 2009 (diff | hist) . . (+9) . . m Model Robustness (current)
- 10:04, 14 April 2009 (diff | hist) . . (+802) . . Nm Model Robustness (Created page with '==Robustness test: LINK_BREAKAGE_FORCE== 600px ==Robustness test: LINK_FORCE== 600px ==Robustness te...')
- 09:53, 14 April 2009 (diff | hist) . . (+24) . . N File:08-10-07 1146 imagearray.jpg (Robustness test: P_XLINK) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+33) . . N File:08-10-07 1148 imagearray.jpg (Robustness test: FORCE_SCALE_FACT) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+34) . . N File:08-10-07 1143 imagearray.jpg (Robustness test: NUCLEATOR_INERTIA) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+22) . . N File:08-10-07 1144 imagearray.jpg (Robustness test: P_NUC) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+23) . . N File:08-10-07 1145 imagearray.jpg (Robustness test: RADIUS) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+27) . . N File:08-10-07 1139 imagearray.jpg (Robustness test: LINK_FORCE) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+35) . . N File:08-10-07 1140 imagearray.jpg (Robustness test: NODE_REPLUSIVE_MAG) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+31) . . N File:08-10-07 1141 imagearray.jpg (Robustness test: NUC_LINK_FORCE) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+39) . . N File:08-10-07 1142 imagearray.jpg (Robustness test: NUC_LINK_BREAKAGE_DIST) (current)
- 09:50, 14 April 2009 (diff | hist) . . (+36) . . N File:08-10-07 1138 imagearray.jpg (Robustness test: LINK_BREAKAGE_FORCE) (current)
- 08:50, 14 April 2009 (diff | hist) . . (-4) . . m To Do (current)
- 08:42, 14 April 2009 (diff | hist) . . (-51) . . m Cometparams.ini parameter file
- 08:38, 14 April 2009 (diff | hist) . . (+7) . . m CometWiki (→Code Status)
- 08:38, 14 April 2009 (diff | hist) . . (-8) . . m CometWiki (→Code Status)
- 18:24, 13 April 2009 (diff | hist) . . (+52) . . m CometWiki (→Code Status)
- 18:22, 13 April 2009 (diff | hist) . . (+90) . . m CometWiki (→Code Status)
- 18:08, 13 April 2009 (diff | hist) . . (+56) . . m CometWiki
- 13:17, 13 April 2009 (diff | hist) . . (-140) . . m Program Flow
- 13:15, 13 April 2009 (diff | hist) . . (+3,469) . . m Program Flow
- 13:10, 13 April 2009 (diff | hist) . . (+21) . . m CometWiki
- 13:07, 13 April 2009 (diff | hist) . . (+5,860) . . Nm Detailed Program Flow (Created page with '=Implementation in C++= The code is written in C++ for speed. We attempt to use an somewhat object-based approach, but a good many of the member variables are declared as stati...')
- 12:55, 13 April 2009 (diff | hist) . . (+32) . . m CometWiki
- 12:03, 13 April 2009 (diff | hist) . . (+93) . . m Program Flow
- 11:53, 13 April 2009 (diff | hist) . . (0) . . N File:Overview complex.svg (current)
- 11:48, 13 April 2009 (diff | hist) . . (+196) . . Nm Program Flow (Created page with 'Figure 1: Comet program flow The program works in an iterative loop: creating new nodes and links, and updating the positions of existin...')
- 11:33, 13 April 2009 (diff | hist) . . (0) . . N File:Overview simple.svg (current)
- 11:29, 13 April 2009 (diff | hist) . . (+77) . . m CometWiki
- 11:27, 13 April 2009 (diff | hist) . . (-52) . . m CometWiki (→Code Status)
- 11:27, 13 April 2009 (diff | hist) . . (+53) . . m CometWiki (→Code Status)
- 11:25, 13 April 2009 (diff | hist) . . (+614) . . Nm To Do (Created page with '*XML import/export format. **At the moment, if we change the load/save code to add a variable etc, the save file format changes so we can't load old datasets. Current workarou...')
- 11:20, 13 April 2009 (diff | hist) . . (+3) . . m Known Issues
- 11:19, 13 April 2009 (diff | hist) . . (+158) . . Nm Known Issues (Created page with ' *As of 04-13-09 seems to be some issue with the symmetry breaking thread crashing. Seems to work fine to just run 'comet post 0:0' after the run is complete')
- 11:18, 13 April 2009 (diff | hist) . . (+47) . . m CometWiki
- 11:14, 13 April 2009 (diff | hist) . . (+94) . . m CometWiki
- 11:09, 13 April 2009 (diff | hist) . . (-7) . . m CometWiki
- 11:09, 13 April 2009 (diff | hist) . . (0) . . m Running comet on a cluster (moved Recommendations for running comet to Running comet on a cluster)
- 11:09, 13 April 2009 (diff | hist) . . (+40) . . N Recommendations for running comet (moved Recommendations for running comet to Running comet on a cluster) (current)
- 11:08, 13 April 2009 (diff | hist) . . (-9) . . m CometWiki
- 11:03, 13 April 2009 (diff | hist) . . (-13) . . m Installing
- 11:03, 13 April 2009 (diff | hist) . . (-9) . . m Installing
- 10:59, 13 April 2009 (diff | hist) . . (+17) . . m Running comet on a cluster
- 10:59, 13 April 2009 (diff | hist) . . (+495) . . Running comet on a cluster
- 10:56, 13 April 2009 (diff | hist) . . (+1,719) . . Nm Running comet on a cluster (Created page with 'We highly recommend running 'comet' on a cluster of machines, rather than one. The program takes some time to run (an hour or two for early events like symmetry breaking; overni...')
- 10:34, 13 April 2009 (diff | hist) . . (+26) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (+1) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (0) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (-18) . . m CometWiki
- 10:31, 13 April 2009 (diff | hist) . . (-17) . . m CometWiki
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