User contributions
- 08:25, 4 May 2010 (diff | hist) . . (+16) . . m 3D Reconstructions of in vitro Unconstrained Shells (current)
- 08:24, 4 May 2010 (diff | hist) . . (-24) . . m 3D Reconstructions of in vitro Unconstrained Shells
- 18:02, 21 November 2009 (diff | hist) . . (-1) . . m Implementation in C++ (current)
- 18:35, 15 November 2009 (diff | hist) . . (+1) . . m CometWiki (current)
- 18:35, 15 November 2009 (diff | hist) . . (-22) . . m CometWiki
- 11:58, 7 November 2009 (diff | hist) . . (+111) . . Nm MediaWiki:Desc-0-Description of the Model (Created page with 'Detailed description of the simulation used to computationally model actin-based symmetry breaking and motility') (current)
- 11:57, 7 November 2009 (diff | hist) . . (+107) . . Nm MediaWiki:Desc-0-Ellipsoid and Capsule symmetry breaking (Created page with 'Sideways actin-based symmetry breaking motion for simulated ellipsoidal and capsule (listeria-shaped) beads') (current)
- 11:56, 7 November 2009 (diff | hist) . . (+88) . . Nm MediaWiki:Desc-0-Forces during Symmetry Breaking (Created page with 'Forces during actin-based symmetry breaking and motility, calculated from the simulation') (current)
- 11:55, 7 November 2009 (diff | hist) . . (+57) . . Nm MediaWiki:Desc-0-Symmetry Breaking and Motility (Created page with 'Simulations of actin-based symmetry breaking and motility') (current)
- 11:46, 7 November 2009 (diff | hist) . . (+63) . . Nm MediaWiki:Desc-0-CometWiki (Created page with 'Project page for comet, the actin-based bead motility simulator') (current)
- 11:19, 7 November 2009 (diff | hist) . . (-22) . . m Installing (→Downloading the source) (current)
- 11:18, 7 November 2009 (diff | hist) . . (-66) . . m Installing (→Compiling)
- 11:18, 7 November 2009 (diff | hist) . . (+77) . . m Installing (→Downloading the source)
- 12:27, 1 November 2009 (diff | hist) . . (+3) . . m MediaWiki:Sidebar (current)
- 12:10, 1 November 2009 (diff | hist) . . (-17) . . m MediaWiki:Sidebar
- 17:24, 29 October 2009 (diff | hist) . . (-181) . . m Help:Contents (→Wikitext Formatting) (current)
- 17:24, 29 October 2009 (diff | hist) . . (+1,801) . . Nm Help:Contents (Created page with 'Here are some instructions on using CometWiki. The syntax is essentially the same as wikipedia. Another good way to learn is to use existing pages as examples---click the 'edit…')
- 17:20, 29 October 2009 (diff | hist) . . (+167) . . m CometWiki:Privacy policy (current)
- 17:17, 29 October 2009 (diff | hist) . . (+1,039) . . Nm CometWiki:General disclaimer (Created page with 'The content of this site is being provided freely, and no kind of agreement or contract is created between you and the owners or users of this site, the owners of the servers upo…') (current)
- 17:17, 29 October 2009 (diff | hist) . . (+1,039) . . Nm CometWiki:Privacy policy (Created page with 'The content of this site is being provided freely, and no kind of agreement or contract is created between you and the owners or users of this site, the owners of the servers upo…')
- 17:15, 29 October 2009 (diff | hist) . . (+2) . . Nm $1 (Created page with '$1') (current)
- 08:04, 22 September 2009 (diff | hist) . . (+81) . . m CometWiki
- 15:29, 9 September 2009 (diff | hist) . . (+139) . . m Installing
- 15:20, 9 September 2009 (diff | hist) . . (+171) . . m Installing
- 15:17, 9 September 2009 (diff | hist) . . (0) . . m CometWiki
- 12:45, 7 September 2009 (diff | hist) . . (-1,647) . . m CometWiki
- 12:18, 7 September 2009 (diff | hist) . . (+484) . . m CometWiki
- 21:59, 6 September 2009 (diff | hist) . . (+96) . . m CometWiki
- 19:40, 5 September 2009 (diff | hist) . . (+20) . . m CometWiki
- 19:28, 5 September 2009 (diff | hist) . . (-1) . . m CometWiki
- 19:27, 5 September 2009 (diff | hist) . . (+2) . . m CometWiki
- 10:08, 4 September 2009 (diff | hist) . . (+90) . . m CometWiki
- 19:33, 2 August 2009 (diff | hist) . . (+60) . . m CometWiki
- 09:54, 30 July 2009 (diff | hist) . . (+55) . . m MediaWiki:Sidebar
- 20:24, 26 July 2009 (diff | hist) . . (-5) . . m CometWiki
- 18:00, 26 July 2009 (diff | hist) . . (+8) . . m CometWiki
- 17:59, 26 July 2009 (diff | hist) . . (+9) . . m CometWiki
- 17:49, 26 July 2009 (diff | hist) . . (+80) . . m CometWiki
- 17:47, 26 July 2009 (diff | hist) . . (-1) . . m CometWiki
- 17:47, 26 July 2009 (diff | hist) . . (-36) . . m CometWiki
- 17:46, 26 July 2009 (diff | hist) . . (+2) . . m CometWiki
- 17:34, 26 July 2009 (diff | hist) . . (-45) . . m MediaWiki:Sidebar
- 17:04, 26 July 2009 (diff | hist) . . (+1) . . m CometWiki
- 17:04, 26 July 2009 (diff | hist) . . (0) . . m CometWiki
- 17:02, 26 July 2009 (diff | hist) . . (+9) . . Nm MediaWiki:Mainpage (Created page with 'CometWiki') (current)
- 17:01, 26 July 2009 (diff | hist) . . (-13) . . m CometWiki (→CometWiki)
- 17:01, 26 July 2009 (diff | hist) . . (0) . . m CometWiki (moved Main Page to CometWiki)
- 17:01, 26 July 2009 (diff | hist) . . (+23) . . N Main Page (moved Main Page to CometWiki) (current)
- 21:26, 25 July 2009 (diff | hist) . . (-152) . . m CometWiki
- 22:27, 24 July 2009 (diff | hist) . . (+3) . . m MediaWiki:Sidebar
- 14:10, 20 July 2009 (diff | hist) . . (+2) . . m MediaWiki:Sidebar
- 14:10, 20 July 2009 (diff | hist) . . (+43) . . m MediaWiki:Sidebar
- 16:48, 14 July 2009 (diff | hist) . . (+30) . . m Cometparams.ini parameter file (current)
- 16:47, 14 July 2009 (diff | hist) . . (+15) . . m Description of the Model (current)
- 16:45, 14 July 2009 (diff | hist) . . (+109) . . m Cometparams.ini parameter file
- 13:40, 14 July 2009 (diff | hist) . . (+1) . . m MediaWiki:Sidebar
- 13:40, 14 July 2009 (diff | hist) . . (-1) . . m MediaWiki:Sidebar
- 13:37, 14 July 2009 (diff | hist) . . (+1) . . m MediaWiki:Sidebar
- 13:13, 13 July 2009 (diff | hist) . . (-1) . . m MediaWiki:Sidebar
- 13:12, 13 July 2009 (diff | hist) . . (+27) . . m MediaWiki:Sidebar
- 23:00, 5 July 2009 (diff | hist) . . (+15) . . m Installing
- 12:50, 24 June 2009 (diff | hist) . . (-1) . . m CometWiki
- 12:50, 24 June 2009 (diff | hist) . . (+89) . . m CometWiki (→In Depth Information)
- 12:49, 24 June 2009 (diff | hist) . . (-54) . . m CometWiki (→How the program works)
- 12:46, 24 June 2009 (diff | hist) . . (+220) . . m 3D Reconstructions of in vitro Unconstrained Shells
- 12:46, 24 June 2009 (diff | hist) . . (+220) . . m 3D Reconstructions of in vitro Constrained Shells (current)
- 20:31, 16 June 2009 (diff | hist) . . (+15) . . m CometWiki
- 20:29, 16 June 2009 (diff | hist) . . (+104) . . m MediaWiki:Sidebar
- 20:26, 16 June 2009 (diff | hist) . . (-46) . . m Known Issues (current)
- 20:26, 16 June 2009 (diff | hist) . . (+13) . . m MediaWiki:Sidebar
- 20:26, 16 June 2009 (diff | hist) . . (-2) . . m MediaWiki:Sidebar
- 20:25, 16 June 2009 (diff | hist) . . (-2) . . m MediaWiki:Sidebar
- 20:25, 16 June 2009 (diff | hist) . . (0) . . m MediaWiki:Sidebar
- 20:25, 16 June 2009 (diff | hist) . . (-6) . . m MediaWiki:Sidebar
- 20:24, 16 June 2009 (diff | hist) . . (-2) . . m MediaWiki:Sidebar
- 20:24, 16 June 2009 (diff | hist) . . (+227) . . m MediaWiki:Sidebar
- 20:21, 16 June 2009 (diff | hist) . . (0) . . m CometWiki
- 09:50, 16 June 2009 (diff | hist) . . (+78) . . m CometWiki
- 12:47, 14 May 2009 (diff | hist) . . (+442) . . m Running comet on a cluster (current)
- 15:52, 11 May 2009 (diff | hist) . . (+45) . . m Known Issues
- 15:32, 11 May 2009 (diff | hist) . . (+65) . . m Installing
- 15:02, 11 May 2009 (diff | hist) . . (+108) . . m CometWiki
- 18:34, 7 May 2009 (diff | hist) . . (+496) . . Nm Radial Force Movies (Created page with 'To make the radial force movies, use the makeradialmovie script (which uses the gplot.sc gplot script). The syntax is makeradialmovie <startframe> <endframe> You currently nee...') (current)
- 18:32, 7 May 2009 (diff | hist) . . (+24) . . m CometWiki (→In Depth Information)
- 20:17, 5 May 2009 (diff | hist) . . (+99) . . m Node Tracks (current)
- 14:01, 5 May 2009 (diff | hist) . . (+25) . . m Node Tracks
- 16:06, 4 May 2009 (diff | hist) . . (+69) . . m Known Issues
- 10:44, 28 April 2009 (diff | hist) . . (+2) . . m Cometparams.ini parameter file (→Node-node repulsion)
- 10:13, 28 April 2009 (diff | hist) . . (+55) . . m Implementation in C++
- 10:11, 28 April 2009 (diff | hist) . . (+25) . . m Description of the Model
- 10:10, 28 April 2009 (diff | hist) . . (-1) . . m Running comet on a cluster
- 14:50, 27 April 2009 (diff | hist) . . (0) . . m Running the program (→Command line syntax) (current)
- 13:17, 27 April 2009 (diff | hist) . . (0) . . m Cometparams.ini parameter file (→Node-node repulsion)
- 13:12, 27 April 2009 (diff | hist) . . (-19) . . m Cometparams.ini parameter file (→Drag)
- 13:12, 27 April 2009 (diff | hist) . . (-75) . . m Cometparams.ini parameter file (→Node links)
- 13:11, 27 April 2009 (diff | hist) . . (-3) . . m Cometparams.ini parameter file (→Node-node repulsion)
- 13:11, 27 April 2009 (diff | hist) . . (-23) . . m Cometparams.ini parameter file (→Nucleator Attachments)
- 13:10, 27 April 2009 (diff | hist) . . (-27) . . m Cometparams.ini parameter file (→Nucleator Geometry)
- 13:10, 27 April 2009 (diff | hist) . . (-74) . . m Cometparams.ini parameter file (→Run Time)
- 20:05, 26 April 2009 (diff | hist) . . (+9) . . m CometWiki (→Introduction)
- 20:00, 26 April 2009 (diff | hist) . . (+42) . . m CometWiki (→Introduction)
- 19:58, 26 April 2009 (diff | hist) . . (+20) . . m CometWiki (→CometWiki)
- 19:58, 26 April 2009 (diff | hist) . . (+1) . . m CometWiki (→CometWiki)
- 19:57, 26 April 2009 (diff | hist) . . (+343) . . m CometWiki
- 19:48, 26 April 2009 (diff | hist) . . (+76) . . m CometWiki
- 17:58, 26 April 2009 (diff | hist) . . (+1) . . m CometWiki
- 17:58, 26 April 2009 (diff | hist) . . (+23) . . m CometWiki (→In Depth Information)
- 17:57, 26 April 2009 (diff | hist) . . (+12) . . m CometWiki (→In Depth)
- 17:57, 26 April 2009 (diff | hist) . . (-15) . . m CometWiki (→How the program works)
- 17:57, 26 April 2009 (diff | hist) . . (0) . . m Detailed Program Flow (moved Implementation to Detailed Program Flow) (current)
- 17:57, 26 April 2009 (diff | hist) . . (+35) . . N Implementation (moved Implementation to Detailed Program Flow) (current)
- 17:56, 26 April 2009 (diff | hist) . . (-3) . . m CometWiki (→How the program works)
- 17:56, 26 April 2009 (diff | hist) . . (0) . . m Program Flow (moved How comet works to Program Flow) (current)
- 17:56, 26 April 2009 (diff | hist) . . (+26) . . N How comet works (moved How comet works to Program Flow) (current)
- 17:56, 26 April 2009 (diff | hist) . . (-15) . . m Program Flow
- 17:55, 26 April 2009 (diff | hist) . . (-17) . . m Detailed Program Flow (→Implementation)
- 17:55, 26 April 2009 (diff | hist) . . (-28) . . m Detailed Program Flow (→Implementation)
- 17:55, 26 April 2009 (diff | hist) . . (+7) . . m CometWiki (→How the program works)
- 17:54, 26 April 2009 (diff | hist) . . (0) . . m CometWiki
- 17:53, 26 April 2009 (diff | hist) . . (-23) . . m Description of the Model
- 17:53, 26 April 2009 (diff | hist) . . (+3,732) . . Nm Description of the Model (Created page with '=Description of model= Figure 1: Schematic of node and link arrangement The <code>comet</code> program is a Monte-Carlo/Lagrangian model ...')
- 17:53, 26 April 2009 (diff | hist) . . (+30) . . m CometWiki (→How the program works)
- 17:53, 26 April 2009 (diff | hist) . . (-3,735) . . m Program Flow (Replaced content with '=Program flow= The core of the program is essentially the following iteration loop. Nodes are added, forces calculated, and node positions updated as shown: [[file:Overvie...')
- 17:52, 26 April 2009 (diff | hist) . . (+144) . . m Program Flow (→Program flow)
- 17:51, 26 April 2009 (diff | hist) . . (+16) . . m Program Flow
- 17:48, 26 April 2009 (diff | hist) . . (0) . . N File:Overview simple.png (current)
- 17:39, 26 April 2009 (diff | hist) . . (+5,673) . . Nm Implementation in C++ (Created page with '=Implementation in C++= The code is written in C++ for speed. We attempt to use an somewhat object-based approach, but a good many of the member variables are declared as static...')
- 17:39, 26 April 2009 (diff | hist) . . (+27) . . m CometWiki (→How the program works)
- 17:38, 26 April 2009 (diff | hist) . . (-5,556) . . m Detailed Program Flow (Replaced content with '=Implementation= The flowchart below shows a detailed view of the how the program works (click for full size image). [[file:Overview_complex.png|800px|Figure 2: Comet progr...')
- 17:36, 26 April 2009 (diff | hist) . . (-6) . . m Detailed Program Flow
- 17:35, 26 April 2009 (diff | hist) . . (0) . . N File:Overview complex.png (current)
- 16:26, 26 April 2009 (diff | hist) . . (-161) . . m Known Issues (Blanked the page)
- 15:34, 24 April 2009 (diff | hist) . . (+5) . . m Cometparams.ini parameter file
- 15:31, 24 April 2009 (diff | hist) . . (+115) . . m Cometparams.ini parameter file
- 15:30, 24 April 2009 (diff | hist) . . (+379) . . m Cometparams.ini parameter file
- 15:24, 24 April 2009 (diff | hist) . . (-4) . . m Cometparams.ini parameter file
- 15:24, 24 April 2009 (diff | hist) . . (+9) . . m Cometparams.ini parameter file
- 15:23, 24 April 2009 (diff | hist) . . (+76) . . m Cometparams.ini parameter file
- 15:22, 24 April 2009 (diff | hist) . . (+1,852) . . m Cometparams.ini parameter file (Added units)
- 17:39, 19 April 2009 (diff | hist) . . (+149) . . m CometWiki:Copyrights (current)
- 17:23, 19 April 2009 (diff | hist) . . (-67) . . m Node Tracks
- 17:20, 19 April 2009 (diff | hist) . . (+290) . . Nm CometWiki:Copyrights (Created page with 'Content of CometWiki is licensed under the [http://creativecommons.org/licenses/by-sa/3.0/ Creative Commons Attribution-Share Alike license]. You are free to copy, distribute, a...')
- 17:09, 17 April 2009 (diff | hist) . . (-6) . . m Cometparams.ini parameter file
- 17:06, 17 April 2009 (diff | hist) . . (-136) . . m Cometparams.ini parameter file
- 17:03, 17 April 2009 (diff | hist) . . (0) . . m Program Flow
- 16:46, 17 April 2009 (diff | hist) . . (-104) . . m Detailed Program Flow
- 16:38, 17 April 2009 (diff | hist) . . (-106) . . m Program Flow
- 16:38, 17 April 2009 (diff | hist) . . (0) . . m CometWiki (→How the program works)
- 16:33, 17 April 2009 (diff | hist) . . (+2) . . m Node Tracks
- 16:31, 17 April 2009 (diff | hist) . . (+299) . . m Node Tracks
- 15:47, 17 April 2009 (diff | hist) . . (+80) . . m Cometparams.ini parameter file
- 15:44, 17 April 2009 (diff | hist) . . (-1) . . m Program Flow
- 15:37, 17 April 2009 (diff | hist) . . (+2) . . m Using Git (current)
- 15:34, 17 April 2009 (diff | hist) . . (+224) . . m Using Git
- 15:02, 17 April 2009 (diff | hist) . . (+169) . . m Program Flow (→Simple Overview)
- 14:59, 17 April 2009 (diff | hist) . . (+22) . . N File:Mymodel forces.png (Forces acting on nodes) (current)
- 14:59, 17 April 2009 (diff | hist) . . (+44) . . N File:Mymodel.png (Diagram of node/link arrangement around bead) (current)
- 14:42, 17 April 2009 (diff | hist) . . (+127) . . m Program Flow (→Simple Overview)
- 14:38, 17 April 2009 (diff | hist) . . (+54) . . N File:Links crosssection inset.jpg (Cross section of shell showing links colored by strain) (current)
- 18:27, 16 April 2009 (diff | hist) . . (0) . . m CometWiki (→CometWiki)
- 18:26, 16 April 2009 (diff | hist) . . (+7) . . m CometWiki (→Examples)
- 18:25, 16 April 2009 (diff | hist) . . (+1) . . m CometWiki
- 18:24, 16 April 2009 (diff | hist) . . (+127) . . m CometWiki (→Simulator Output)
- 18:24, 16 April 2009 (diff | hist) . . (-112) . . m CometWiki (→Examples)
- 18:22, 16 April 2009 (diff | hist) . . (+850) . . Nm 3D Reconstructions of in vitro Unconstrained Shells (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS9_MM2-Rx4-01.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS9_MM2-Rx4-01.mov.png] Constrained Shell #1 [http://www.d...')
- 18:21, 16 April 2009 (diff | hist) . . (+673) . . Nm 3D Reconstructions of in vitro Constrained Shells (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS8_MM2-Rx6-01.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS8_MM2-Rx6-01.mov.png] Constrained Shell #1 [http://www.d...')
- 18:21, 16 April 2009 (diff | hist) . . (+399) . . Nm Ellipsoid and Capsule symmetry breaking (Created page with '[http://www.dayel.com/comet/supmat/movies/FigS7a_Ellipsoid_vtk_.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS7a_Ellipsoid_vtk_.mov.png] Sideways symmetry breaking...') (current)
- 18:21, 16 April 2009 (diff | hist) . . (+427) . . m Circumferential and Radial measurements (current)
- 18:20, 16 April 2009 (diff | hist) . . (-229) . . m Circumferential and Radial measurements
- 18:20, 16 April 2009 (diff | hist) . . (-219) . . m Forces during Symmetry Breaking (current)
- 18:19, 16 April 2009 (diff | hist) . . (+649) . . Nm Circumferential and Radial measurements (Created page with ' [http://www.dayel.com/comet/supmat/movies/FigS6b_vtk_radial_trimmed.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS6b_vtk_radial_trimmed.mov.png] Radial measuremen...')
- 18:19, 16 April 2009 (diff | hist) . . (+637) . . Nm Forces during Symmetry Breaking (Created page with '==Circumferential and Radial measurements== [http://www.dayel.com/comet/supmat/movies/FigS4a_circ_measure_vtk_.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS4a_cir...')
- 18:18, 16 April 2009 (diff | hist) . . (+652) . . Nm Symmetry Breaking and Motility (Created page with 'Click on the thumbnails below to play example movies. ==Symmetry Breaking and Motility== [http://www.dayel.com/comet/supmat/movies/FigS1_Data09_roi_frame_.mov http://www.dayel...') (current)
- 18:18, 16 April 2009 (diff | hist) . . (+301) . . m CometWiki
- 18:15, 16 April 2009 (diff | hist) . . (-14) . . m CometWiki
- 18:15, 16 April 2009 (diff | hist) . . (-1) . . m CometWiki
- 18:14, 16 April 2009 (diff | hist) . . (-25) . . m CometWiki
- 18:14, 16 April 2009 (diff | hist) . . (+62) . . m CometWiki
- 18:11, 16 April 2009 (diff | hist) . . (-20) . . m CometWiki (→In Depth)
- 18:07, 16 April 2009 (diff | hist) . . (+1) . . m Installing (→Installing the program)
- 18:06, 16 April 2009 (diff | hist) . . (+32) . . m Installing
- 18:06, 16 April 2009 (diff | hist) . . (+54) . . m Installing (→Installing the program)
- 18:03, 16 April 2009 (diff | hist) . . (+67) . . m Installing (→Downloading the source)
- 18:01, 16 April 2009 (diff | hist) . . (-12) . . m Installing (→Precomiled binary for OS X)
- 18:01, 16 April 2009 (diff | hist) . . (-30) . . m Installing (→Installing the program)
- 18:00, 16 April 2009 (diff | hist) . . (+70) . . m Installing (→Precomiled binary for OS X)
- 17:59, 16 April 2009 (diff | hist) . . (+15) . . m CometWiki (→Installing the program)
- 17:57, 16 April 2009 (diff | hist) . . (+68) . . m CometWiki (→Installing the program)
- 17:56, 16 April 2009 (diff | hist) . . (+343) . . m CometWiki (→Running the program)
- 17:52, 16 April 2009 (diff | hist) . . (+27) . . m CometWiki
- 17:51, 16 April 2009 (diff | hist) . . (+57) . . m CometWiki (→Running the program)
- 17:47, 16 April 2009 (diff | hist) . . (-120) . . m Cometparams.ini parameter file
- 17:43, 16 April 2009 (diff | hist) . . (+2,732) . . m Display settings (current)
- 17:18, 16 April 2009 (diff | hist) . . (+313) . . m Display settings (→Plotting forces on bead)
- 14:48, 16 April 2009 (diff | hist) . . (+530) . . Nm Using Git (Created page with '[http://zrusin.blogspot.com/2007/09/git-cheat-sheet.html This cheat sheet] is a good summary of useful git commands. To have changes you've made merged into the main repository,...')
- 14:41, 16 April 2009 (diff | hist) . . (+15) . . m CometWiki (→Code Status)
- 12:49, 15 April 2009 (diff | hist) . . (+1,145) . . m Display settings
- 12:37, 15 April 2009 (diff | hist) . . (+1,873) . . Nm Display settings (Created page with 'Many settings in the <code>cometparams.ini</code> affect the way data is displayed. ==Bitmap display settings== ===Basic settings=== X_BMP true Y_BMP ...')
- 12:21, 15 April 2009 (diff | hist) . . (+22) . . m CometWiki
- 10:21, 14 April 2009 (diff | hist) . . (+197) . . Nm CometWiki:About (Created page with 'This site describes the set up and usage of `comet', an actin-based bead motility simulator. If you would like to help edit the site, fill out [[Special:RequestAccount|an acc...') (current)
- 10:07, 14 April 2009 (diff | hist) . . (+9) . . m Model Robustness (current)
- 10:04, 14 April 2009 (diff | hist) . . (+802) . . Nm Model Robustness (Created page with '==Robustness test: LINK_BREAKAGE_FORCE== 600px ==Robustness test: LINK_FORCE== 600px ==Robustness te...')
- 09:53, 14 April 2009 (diff | hist) . . (+24) . . N File:08-10-07 1146 imagearray.jpg (Robustness test: P_XLINK) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+33) . . N File:08-10-07 1148 imagearray.jpg (Robustness test: FORCE_SCALE_FACT) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+34) . . N File:08-10-07 1143 imagearray.jpg (Robustness test: NUCLEATOR_INERTIA) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+22) . . N File:08-10-07 1144 imagearray.jpg (Robustness test: P_NUC) (current)
- 09:53, 14 April 2009 (diff | hist) . . (+23) . . N File:08-10-07 1145 imagearray.jpg (Robustness test: RADIUS) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+27) . . N File:08-10-07 1139 imagearray.jpg (Robustness test: LINK_FORCE) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+35) . . N File:08-10-07 1140 imagearray.jpg (Robustness test: NODE_REPLUSIVE_MAG) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+31) . . N File:08-10-07 1141 imagearray.jpg (Robustness test: NUC_LINK_FORCE) (current)
- 09:51, 14 April 2009 (diff | hist) . . (+39) . . N File:08-10-07 1142 imagearray.jpg (Robustness test: NUC_LINK_BREAKAGE_DIST) (current)
- 09:50, 14 April 2009 (diff | hist) . . (+36) . . N File:08-10-07 1138 imagearray.jpg (Robustness test: LINK_BREAKAGE_FORCE) (current)
- 08:50, 14 April 2009 (diff | hist) . . (-4) . . m To Do (current)
- 08:42, 14 April 2009 (diff | hist) . . (-51) . . m Cometparams.ini parameter file
- 08:38, 14 April 2009 (diff | hist) . . (+7) . . m CometWiki (→Code Status)
- 08:38, 14 April 2009 (diff | hist) . . (-8) . . m CometWiki (→Code Status)
- 18:24, 13 April 2009 (diff | hist) . . (+52) . . m CometWiki (→Code Status)
- 18:22, 13 April 2009 (diff | hist) . . (+90) . . m CometWiki (→Code Status)
- 18:08, 13 April 2009 (diff | hist) . . (+56) . . m CometWiki
- 13:17, 13 April 2009 (diff | hist) . . (-140) . . m Program Flow
- 13:15, 13 April 2009 (diff | hist) . . (+3,469) . . m Program Flow
- 13:10, 13 April 2009 (diff | hist) . . (+21) . . m CometWiki
- 13:07, 13 April 2009 (diff | hist) . . (+5,860) . . Nm Detailed Program Flow (Created page with '=Implementation in C++= The code is written in C++ for speed. We attempt to use an somewhat object-based approach, but a good many of the member variables are declared as stati...')
- 12:55, 13 April 2009 (diff | hist) . . (+32) . . m CometWiki
- 12:03, 13 April 2009 (diff | hist) . . (+93) . . m Program Flow
- 11:53, 13 April 2009 (diff | hist) . . (0) . . N File:Overview complex.svg (current)
- 11:48, 13 April 2009 (diff | hist) . . (+196) . . Nm Program Flow (Created page with 'Figure 1: Comet program flow The program works in an iterative loop: creating new nodes and links, and updating the positions of existin...')
- 11:33, 13 April 2009 (diff | hist) . . (0) . . N File:Overview simple.svg (current)
- 11:29, 13 April 2009 (diff | hist) . . (+77) . . m CometWiki
- 11:27, 13 April 2009 (diff | hist) . . (-52) . . m CometWiki (→Code Status)
- 11:27, 13 April 2009 (diff | hist) . . (+53) . . m CometWiki (→Code Status)
- 11:25, 13 April 2009 (diff | hist) . . (+614) . . Nm To Do (Created page with '*XML import/export format. **At the moment, if we change the load/save code to add a variable etc, the save file format changes so we can't load old datasets. Current workarou...')
- 11:20, 13 April 2009 (diff | hist) . . (+3) . . m Known Issues
- 11:19, 13 April 2009 (diff | hist) . . (+158) . . Nm Known Issues (Created page with ' *As of 04-13-09 seems to be some issue with the symmetry breaking thread crashing. Seems to work fine to just run 'comet post 0:0' after the run is complete')
- 11:18, 13 April 2009 (diff | hist) . . (+47) . . m CometWiki
- 11:14, 13 April 2009 (diff | hist) . . (+94) . . m CometWiki
- 11:09, 13 April 2009 (diff | hist) . . (-7) . . m CometWiki
- 11:09, 13 April 2009 (diff | hist) . . (0) . . m Running comet on a cluster (moved Recommendations for running comet to Running comet on a cluster)
- 11:09, 13 April 2009 (diff | hist) . . (+40) . . N Recommendations for running comet (moved Recommendations for running comet to Running comet on a cluster) (current)
- 11:08, 13 April 2009 (diff | hist) . . (-9) . . m CometWiki
- 11:03, 13 April 2009 (diff | hist) . . (-13) . . m Installing
- 11:03, 13 April 2009 (diff | hist) . . (-9) . . m Installing
- 10:59, 13 April 2009 (diff | hist) . . (+17) . . m Running comet on a cluster
- 10:59, 13 April 2009 (diff | hist) . . (+495) . . Running comet on a cluster
- 10:56, 13 April 2009 (diff | hist) . . (+1,719) . . Nm Running comet on a cluster (Created page with 'We highly recommend running 'comet' on a cluster of machines, rather than one. The program takes some time to run (an hour or two for early events like symmetry breaking; overni...')
- 10:34, 13 April 2009 (diff | hist) . . (+26) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (+1) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (0) . . m CometWiki
- 10:32, 13 April 2009 (diff | hist) . . (-18) . . m CometWiki
- 10:31, 13 April 2009 (diff | hist) . . (-17) . . m CometWiki
- 10:31, 13 April 2009 (diff | hist) . . (+4) . . m CometWiki
- 08:34, 13 April 2009 (diff | hist) . . (+130) . . m Installing
- 08:30, 13 April 2009 (diff | hist) . . (0) . . m CometWiki
- 21:55, 12 April 2009 (diff | hist) . . (+57) . . m Examples (current)
- 21:50, 12 April 2009 (diff | hist) . . (-23) . . m CometWiki
- 21:50, 12 April 2009 (diff | hist) . . (-94) . . m CometWiki
- 21:49, 12 April 2009 (diff | hist) . . (+702) . . m CometWiki
- 21:31, 12 April 2009 (diff | hist) . . (+438) . . m CometWiki
- 21:26, 12 April 2009 (diff | hist) . . (-2,105) . . m CometWiki
- 21:21, 12 April 2009 (diff | hist) . . (0) . . m Examples (moved Supmat to Examples)
- 21:21, 12 April 2009 (diff | hist) . . (+22) . . N Supmat (moved Supmat to Examples) (current)
- 21:20, 12 April 2009 (diff | hist) . . (+4,047) . . Nm Examples (Created page with '==Symmetry Breaking and Motility== [http://www.dayel.com/comet/supmat/movies/FigS1_Data09_roi_frame_.mov http://www.dayel.com/comet/supmat/movies/thumbnails/FigS1_Data09_roi_fra...')
- 16:09, 11 April 2009 (diff | hist) . . (+2) . . m CometWiki
- 16:07, 11 April 2009 (diff | hist) . . (-10) . . m CometWiki
- 14:46, 11 April 2009 (diff | hist) . . (+96) . . m Node Tracks
- 20:00, 10 April 2009 (diff | hist) . . (+38) . . m Node Tracks
- 19:38, 10 April 2009 (diff | hist) . . (-1) . . m Node Tracks
- 19:36, 10 April 2009 (diff | hist) . . (+139) . . m Node Tracks
- 19:15, 10 April 2009 (diff | hist) . . (+28) . . m Node Tracks
- 19:12, 10 April 2009 (diff | hist) . . (-116) . . m Node Tracks
- 19:11, 10 April 2009 (diff | hist) . . (+1) . . m Node Tracks
- 19:10, 10 April 2009 (diff | hist) . . (-4) . . m Node Tracks
- 19:10, 10 April 2009 (diff | hist) . . (+80) . . m Node Tracks
- 19:09, 10 April 2009 (diff | hist) . . (+1,451) . . m Node Tracks
- 19:03, 10 April 2009 (diff | hist) . . (+3) . . m Node Tracks
- 19:02, 10 April 2009 (diff | hist) . . (+2) . . m Node Tracks
- 19:02, 10 April 2009 (diff | hist) . . (+1,576) . . Nm Node Tracks (Created page with 'You can use node tracks to see where the network goes. Turn network tracks with the following setting in cometparams.ini. e.g. BMP_TRACKS true # turns on node tracking ...')
- 18:30, 10 April 2009 (diff | hist) . . (+35) . . m CometWiki
- 18:25, 10 April 2009 (diff | hist) . . (+128) . . Nm MediaWiki:Sidebar (Created page with '* navigation ** mainpage|mainpage-description ** recentchanges-url|recentchanges ** helppage|help * SEARCH * TOOLBOX * LANGUAGES')
- 18:06, 10 April 2009 (diff | hist) . . (+109) . . m CometWiki (→Settings)
- 18:05, 10 April 2009 (diff | hist) . . (-64) . . m Cometparams.ini parameter file
- 18:04, 10 April 2009 (diff | hist) . . (+84) . . m CometWiki (→Running the program)
- 18:02, 10 April 2009 (diff | hist) . . (+85) . . m CometWiki (→Installing)
- 18:01, 10 April 2009 (diff | hist) . . (-6) . . m CometWiki
- 18:01, 10 April 2009 (diff | hist) . . (-350) . . m CometWiki
- 17:59, 10 April 2009 (diff | hist) . . (-252) . . m CometWiki
- 17:58, 10 April 2009 (diff | hist) . . (-1) . . m CometWiki
- 17:57, 10 April 2009 (diff | hist) . . (+301) . . m CometWiki
- 17:54, 10 April 2009 (diff | hist) . . (+21) . . m CometWiki (Fixed missing link)
- 17:53, 10 April 2009 (diff | hist) . . (+2,485) . . m CometWiki (Added links to movies in supplementary material)
- 17:04, 10 April 2009 (diff | hist) . . (+320) . . m Installing
- 16:54, 10 April 2009 (diff | hist) . . (-15) . . m Installing
- 16:51, 10 April 2009 (diff | hist) . . (+91) . . m CometWiki
- 16:43, 10 April 2009 (diff | hist) . . (+204) . . CometWiki (Reformatted main page)
- 15:13, 9 October 2008 (diff | hist) . . (+52) . . Installing VTK on OS X (current)
- 15:11, 9 October 2008 (diff | hist) . . (+79) . . Installing (→Dependencies)
- 13:52, 8 October 2008 (diff | hist) . . (-22) . . Installing VTK on OS X
- 13:51, 8 October 2008 (diff | hist) . . (+2,290) . . N Installing VTK on OS X (New page: =Installing VTK on OS X= It took me a little while to get VTK compiled on OS X 10.5. It uses cmake, so it's not straightforward, but seems robust once you know the secret ways. Here's how...)
- 13:49, 8 October 2008 (diff | hist) . . (+88) . . Installing (→Dependencies)
- 12:12, 2 October 2008 (diff | hist) . . (+62) . . Installing
- 12:04, 2 October 2008 (diff | hist) . . (+5,264) . . N Cometparams.ini parameter file (New page: *under construction---still needs converting from LaTeX format ===The cometparams.ini parameter control file=== Here are the core settings in the cometparams.ini file (explained below)...)
- 11:59, 2 October 2008 (diff | hist) . . (+943) . . N Running the program (New page: ===Command line syntax=== The program expects to be run from a new directory containing a copy of the control file cometparams.ini, an example of which is included in the source code and ...)
- 11:56, 2 October 2008 (diff | hist) . . (+3) . . CometWiki
- 11:56, 2 October 2008 (diff | hist) . . (+59) . . CometWiki
- 11:52, 2 October 2008 (diff | hist) . . (+95) . . m Installing
- 11:50, 2 October 2008 (diff | hist) . . (-1) . . m Installing
- 11:50, 2 October 2008 (diff | hist) . . (+268) . . Installing
- 11:45, 2 October 2008 (diff | hist) . . (+1,731) . . N Installing (First draft)
- 13:36, 1 October 2008 (diff | hist) . . (+16) . . CometWiki
- 13:26, 1 October 2008 (diff | hist) . . (-422) . . CometWiki (Replacing page with '<big>'''CometWiki'''</big>')